|
27. Shan Li and Zhengchang Su. Co-evolution of a transcription factor and its cis-regulatory binding sites: a lesson learned from the phoB and its binding sites in bacteria. In preparation
26. Di Huang and Zhengchang Su, Hierarchical functional classification of membrane proteins. In preparation
25. Shaoqiang Zhang, MinLi Xu, Shan Li, and Zhengchang Su. Genome-wide de novo prediction of cis-regulatory binding sites in prokaryotes. Nucleic Acids Research, 2009. doi:10.1093/nar/gkp248. (PMID: 19383880)
24. Minli Xu and Zhengchang Su. Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes. BMC Genomics. 2009 Jan 15;10:23. (PMID: 19146659)
23. Zhengchang Su Guojun Li and Ying Xu. Prediction of regulons through comparative genomics analyses. In Computational methods for understanding bacterial and archaeal genomes. Ying Xu and J. Peter Gogarten (eds). Imperial Colleger Press. 2008. p259-279.
22. Zhengchang Su, Victor Olman and Ying Xu. Computational prediction of Pho regulons in Cyanobacteria. BMC Genomics. 2007 Jun 8;8:156. (PMID: 17559671)
21. P. Dam, V Olman, K. Harris, Z. Su, Ying Xu, Operon prediction using both genome-specific and general genome information, Nucleic Acids Research, 2007;35(1):288-98. (PMID: 17170009)
20. T. Tran, Phuongan Dam, Zhengchang Su, Farris Poole, Michael Adams, G. Tong Zhou, Ying Xu. Operon prediction in Pyrococcus furiosus. Nucleic Acids Res. 2007;35(1):11-20.
(PMID: 17148478)
19. Zhenchang Su , Phuongan Dam, Xin Chen, Victor Olman, Tao Jiang, Brian Plaenik and Ying Xu. Computational inference and experimental validation of nitrogen assimilation regulatory network in cyanobacterium Synechococcus sp. WH8102. Nucleic Acids Research. 2006; 34(3):1050-65.(PMID: 16473855)
18. Andrea Catte, James Patterson; Gilbert Weinstein; Zhengchang Su; Ling Li; Jianguo Chen; Martin Jones; Marcela Aliste; Stephen Harvey; Jere Segrest . Novel Minimal Surface Conformations of Nascent High Density Lipoproteins through Molecular Dynamics. Biophysical Journal. 2006; 90(12):4345-60.(pdf)
17. H. Wu, F. Mao, Z. Su, V Olman, Ying Xu, Prediction of functional modules based on gene distributions in microbial genomes. Genome Inform. 2005;16(2):247-59. (pdf)
16. Zhengchang Su, Victor Olman, Fenglou Mao, and Ying Xu. Comparative genomics analysis of ntcA regulons in cyanobacteria: regulation of nitrogen assimilation and its coupling to photosynthesis. Nucleic Acids Research. 2005, 33(16): 5156-5171.(pdf)
15. Jinling Huang, Zhengchang Su and Ying Xu, The evolution of Microbial phosphonate Degradation Pathways. Journal of Molecular Evolution. 2005; 61(5):682-90. (pdf)
14. Fenglou Mao, Zhengchang Su, Victor Olman, Phuongan Dam, Zhijie Liu, Ying Xu. Mapping of Orthologous Genes in the Context of Biological Pathways: an Application of Integer Programming. Proceedings of National Academy of Sciences U S A . 2005; 103(1):129-34. (pdf).
13. Hongwei Wu, Zhengchang Su, Victor Olman and Ying Xu. Prediction of functional gene modules based on comparative genome analysis and gene otology application, Nucleic Acids Research. 2005;33(9):2822-37.(pdf)
12. Zhengchang Su, Xiaochuan Guo, Richard L. Shoemaker, Richard B. Marchase, and J. Edwin Blalock. A Store-operated Nonselective Cation Channel in Human Lymphocytes. Cellular and Molecular Neurobiology. 2005; 25(3-4):625-47.(pdf)
11. Phuongan Dam and Zhengchang Su and Victor Olman Ying Xu. In sillco reconstruction of the carbon fixation pathway in Synechococcus sp. WH8102. Journal of Biological Systems. 2004; 12:97-125.(pdf)
10. Xin Chen, Zhengchang Su, Ying Xu, Tao Jiang. Computational prediction of operons in Synechococcus sp. WH8102. Genome Informatices 2004; 15(2):211-222.(pdf)
9. Victor Olman, Hanchun Peng, Zhengchang Su, Ying Xu. Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. Proceedings of CSB 2004 Conference. p363-370.(pdf)
8. Zhengchang Su, Richard L. Shoemaker Richard B. Marchase and J. Edwin Blalock. Ca2+ dependent inactivation of monovalent cation current through Ca2+ release activated Ca channels. Biophys J. 2004;86(2):805-14.(pdf)
7. X. Chen, Z. Su, P. Dam, B. Palenik, Y. Xu and T. Jiang. Operon prediction by comparative genomics. Nucleic Acid Research. 2004; 19;32(7):2147-57. (pdf)
6. Zhenchang Su , Phuongan Dam, Xin Chen Vicor Olman, Tao Jiang, Brian Plaenik and Ying Xu. Computational inference of regulatory pathway in microbes. An application to phosphorus assimilation pathway. Genome Informatics 2003; 14:1-10 (pdf)
5. Zhengchang Su, Douglas S. Barker, Peter Csutora, Theresa Chang, Richard L. Shoemaker, Richard B. Marchase and J. Edwin Blalock. Regulation of Ca2+ release activated Ca2+ channel by INAD and Calcium influx factors. Am J Physiol Cell Physiol. 2003;284(2):C497-505.(pdf)
4. Zhengchang Su, Peter Csutora, Dacia Hunton, Richard L. Shoemaker, Richard B. Marchase, and J. Edwin Blalock A Store-operated Non-selective Cation Channel in Lymphocytes is Activated Directly by Ca2+ Influx Factor (CIF) and Diacylglycerol. American Journal of Physiology. 2001;280(5):C1284-92.(pdf)
3. Manion MK, Su Z, Villain M, Blalock JE. A new type of Ca(2+) channel blocker that targets Ca(2+) sensors and prevents Ca(2+)-mediated apoptosis. FASEB Journal. 2000;14(10):1297-306.(pdf)
2. Villain M, Jackson PL, Manion MK, Dong WJ, Su Z, Fassina G, Johnson TM, Sakai TT, Krishna NR, Blalock JE. De novo design of peptides targeted to the EF hands of calmodulin. Journal of Biological Chemistry 2000; 275(4):2676-85 (pdf)
1. Csutora P, Su Z, Kim HY, Bugrim A, Cunningham KW, Nuccitelli R, Keizer JE, Hanley MR, Blalock JE, Marchase RB. Calcium influx factor is synthesized by yeast and mammalian cells depleted of organellar calcium stores. Proceedings of National Academy of Sciences U S A. 1999;96(1):121-6. (pdf)
|
